IL_6FXC_065

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

6FXC|1|AA|U|1828, 6FXC|1|AA|U|1843, 6FXC|1|AA|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_065 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0711

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6FXC|1|AA|U|1825
6FXC|1|AA|G|1826
6FXC|1|AA|C|1827
6FXC|1|AA|U|1828
6FXC|1|AA|A|1829
6FXC|1|AA|A|1830
6FXC|1|AA|A|1831
*
6FXC|1|AA|U|1840
6FXC|1|AA|G|1841
6FXC|1|AA|A|1842
6FXC|1|AA|U|1843
6FXC|1|AA|G|1844
6FXC|1|AA|U|1845
6FXC|1|AA|A|1846
6FXC|1|AA|U|1847
6FXC|1|AA|A|1848

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2

Chain Aa

Small subunit ribosomal RNA; SSU rRNA