IL_6FXC_069

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_069 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.2523

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6FXC|1|AA|U|1878
6FXC|1|AA|U|1879
6FXC|1|AA|A|1880
6FXC|1|AA|A|1881
6FXC|1|AA|G|1882
*
6FXC|1|AA|C|1914
6FXC|1|AA|G|1915
6FXC|1|AA|A|1916
6FXC|1|AA|A|1917
6FXC|1|AA|G|1918

Current chains

Chain AA

23S ribosomal RNA

Nearby chains