IL_6FXC_082

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

6FXC|1|AA|U|2429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_082 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.3865

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6FXC|1|AA|U|2428
6FXC|1|AA|U|2429
6FXC|1|AA|C|2430
*
6FXC|1|AA|G|2441
6FXC|1|AA|G|2442

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L33

Chain AJ

50S ribosomal protein L15