IL_6FXC_128

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6FXC|1|Aa|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_128 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.103

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6FXC|1|Aa|C|577
6FXC|1|Aa|G|578
6FXC|1|Aa|U|579
6FXC|1|Aa|A|580
6FXC|1|Aa|A|581
6FXC|1|Aa|A|582
6FXC|1|Aa|G|583
*
6FXC|1|Aa|C|889
6FXC|1|Aa|G|890

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

30S ribosomal protein S12

Chain Aq

30S ribosomal protein S17