IL_6FXC_140

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_140 not in the Motif Atlas

Geometric match to IL_4LFB_033

Geometric discrepancy: 0.0826

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6FXC|1|Aa|C|787
6FXC|1|Aa|A|788
6FXC|1|Aa|A|789
6FXC|1|Aa|A|790
6FXC|1|Aa|C|791
*
6FXC|1|Aa|G|807
6FXC|1|Aa|G|808
6FXC|1|Aa|U|809
6FXC|1|Aa|A|810
6FXC|1|Aa|G|811

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ak

30S ribosomal protein S11

Chain Au

30S ribosomal protein S21