IL_6FXC_176

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_176 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0804

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6FXC|1|BA|C|241
6FXC|1|BA|U|242
6FXC|1|BA|U|243
6FXC|1|BA|A|244
6FXC|1|BA|G|245
6FXC|1|BA|U|246
6FXC|1|BA|A|247
6FXC|1|BA|G|248
*
6FXC|1|BA|C|256
6FXC|1|BA|G|257
6FXC|1|BA|A|258
6FXC|1|BA|A|259
6FXC|1|BA|A|260
6FXC|1|BA|U|261
6FXC|1|BA|G|262

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BJ

50S ribosomal protein L15