IL_6FXC_204

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6FXC|1|BA|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_204 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1066

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6FXC|1|BA|U|1062
6FXC|1|BA|U|1063
6FXC|1|BA|A|1064
6FXC|1|BA|A|1065
6FXC|1|BA|G|1066
6FXC|1|BA|U|1067
6FXC|1|BA|G|1068
*
6FXC|1|BA|C|1184
6FXC|1|BA|U|1185
6FXC|1|BA|A|1186
6FXC|1|BA|A|1187
6FXC|1|BA|A|1188

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BH

50S ribosomal protein L13