3D structure

PDB id
6FXC (explore in PDB, NAKB, or RNA 3D Hub)
Description
The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
6.76 Å

Loop

Sequence
CUAAGC*GUGAUGG
Length
13 nucleotides
Bulged bases
6FXC|1|BA|G|1569
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FXC_221 not in the Motif Atlas
Geometric match to IL_4WF9_058
Geometric discrepancy: 0.1565
The information below is about IL_4WF9_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_88190.1
Basepair signature
cWW-L-R-tHS-L-R-L-R-cWW
Number of instances in this motif group
1

Unit IDs

6FXC|1|BA|C|1511
6FXC|1|BA|U|1512
6FXC|1|BA|A|1513
6FXC|1|BA|A|1514
6FXC|1|BA|G|1515
6FXC|1|BA|C|1516
*
6FXC|1|BA|G|1564
6FXC|1|BA|U|1565
6FXC|1|BA|G|1566
6FXC|1|BA|A|1567
6FXC|1|BA|U|1568
6FXC|1|BA|G|1569
6FXC|1|BA|G|1570

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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