IL_6FXC_221

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUAAGC*GUGAUGG

Length

13 nucleotides

Bulged bases

6FXC|1|BA|G|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_221 not in the Motif Atlas

Geometric match to IL_4WF9_058

Geometric discrepancy: 0.1565

The information below is about IL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88190.1

Basepair signature

cWW-L-R-tHS-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6FXC|1|BA|C|1511
6FXC|1|BA|U|1512
6FXC|1|BA|A|1513
6FXC|1|BA|A|1514
6FXC|1|BA|G|1515
6FXC|1|BA|C|1516
*
6FXC|1|BA|G|1564
6FXC|1|BA|U|1565
6FXC|1|BA|G|1566
6FXC|1|BA|A|1567
6FXC|1|BA|U|1568
6FXC|1|BA|G|1569
6FXC|1|BA|G|1570

Current chains

Chain BA

23S ribosomal RNA

Nearby chains