3D structure

PDB id
6FXC (explore in PDB, NAKB, or RNA 3D Hub)
Description
The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
6.76 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
6FXC|1|BA|G|1743
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FXC_229 not in the Motif Atlas
Homologous match to IL_7RQB_068
Geometric discrepancy: 0.13
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

6FXC|1|BA|C|1730
6FXC|1|BA|G|1731
6FXC|1|BA|U|1732
6FXC|1|BA|A|1733
6FXC|1|BA|A|1734
6FXC|1|BA|C|1735
*
6FXC|1|BA|G|1740
6FXC|1|BA|G|1741
6FXC|1|BA|A|1742
6FXC|1|BA|G|1743
6FXC|1|BA|A|1744
6FXC|1|BA|A|1745
6FXC|1|BA|G|1746

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BC
50S ribosomal protein L2
Chain Ba
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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