IL_6FXC_229
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 6FXC|1|BA|G|1743
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FXC_229 not in the Motif Atlas
- Homologous match to IL_7RQB_068
- Geometric discrepancy: 0.13
- The information below is about IL_7RQB_068
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.2
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6FXC|1|BA|C|1730
6FXC|1|BA|G|1731
6FXC|1|BA|U|1732
6FXC|1|BA|A|1733
6FXC|1|BA|A|1734
6FXC|1|BA|C|1735
*
6FXC|1|BA|G|1740
6FXC|1|BA|G|1741
6FXC|1|BA|A|1742
6FXC|1|BA|G|1743
6FXC|1|BA|A|1744
6FXC|1|BA|A|1745
6FXC|1|BA|G|1746
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L2
- Chain Ba
- Small subunit ribosomal RNA; SSU rRNA
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