IL_6FXC_264

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UU*AUAG

Length

6 nucleotides

Bulged bases

6FXC|1|BA|U|2739, 6FXC|1|BA|A|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_264 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.0943

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6FXC|1|BA|U|2722
6FXC|1|BA|U|2723
*
6FXC|1|BA|A|2738
6FXC|1|BA|U|2739
6FXC|1|BA|A|2740
6FXC|1|BA|G|2741

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BN

50S ribosomal protein L19