IL_6FXC_277

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CCUAAU*AGG

Length

9 nucleotides

Bulged bases

6FXC|1|Ba|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_277 not in the Motif Atlas

Homologous match to IL_5J7L_003

Geometric discrepancy: 0.1282

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6FXC|1|Ba|C|48
6FXC|1|Ba|C|49
6FXC|1|Ba|U|50
6FXC|1|Ba|A|51
6FXC|1|Ba|A|52
6FXC|1|Ba|U|53
*
6FXC|1|Ba|A|367
6FXC|1|Ba|G|368
6FXC|1|Ba|G|369

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bl

30S ribosomal protein S12