IL_6FXC_279

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAG*CG

Length

6 nucleotides

Bulged bases

6FXC|1|Ba|G|65, 6FXC|1|Ba|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_279 not in the Motif Atlas

Homologous match to IL_4LFB_005

Geometric discrepancy: 0.1232

The information below is about IL_4LFB_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6FXC|1|Ba|C|64
6FXC|1|Ba|G|65
6FXC|1|Ba|A|66
6FXC|1|Ba|G|67
*
6FXC|1|Ba|C|102
6FXC|1|Ba|G|103

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bt

30S ribosomal protein S20