IL_6FXC_297

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_297 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1437

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6FXC|1|Ba|U|598
6FXC|1|Ba|U|599
6FXC|1|Ba|U|600
*
6FXC|1|Ba|A|655
6FXC|1|Ba|A|656
6FXC|1|Ba|A|657

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bh

30S ribosomal protein S8

Chain Bo

30S ribosomal protein S15

Chain Bq

30S ribosomal protein S17