IL_6FXC_342

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCUUGUACAGGAUAGGUAGGAGCC*GGCGCUGGUGGGAUACUACCCUAGC

Length

49 nucleotides

Bulged bases

6FXC|1|AA|U|2138, 6FXC|1|AA|A|2139, 6FXC|1|AA|G|2143, 6FXC|1|AA|A|2144, 6FXC|1|AA|U|2145, 6FXC|1|AA|A|2153, 6FXC|1|AA|U|2194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|AA|G|2133
6FXC|1|AA|C|2134
6FXC|1|AA|U|2135
6FXC|1|AA|U|2136
6FXC|1|AA|G|2137
6FXC|1|AA|U|2138
6FXC|1|AA|A|2139
6FXC|1|AA|C|2140
6FXC|1|AA|A|2141
6FXC|1|AA|G|2142
6FXC|1|AA|G|2143
6FXC|1|AA|A|2144
6FXC|1|AA|U|2145
6FXC|1|AA|A|2146
6FXC|1|AA|G|2147
6FXC|1|AA|G|2148
6FXC|1|AA|U|2149
6FXC|1|AA|A|2150
6FXC|1|AA|G|2151
6FXC|1|AA|G|2152
6FXC|1|AA|A|2153
6FXC|1|AA|G|2154
6FXC|1|AA|C|2155
6FXC|1|AA|C|2156
*
6FXC|1|AA|G|2186
6FXC|1|AA|G|2187
6FXC|1|AA|C|2188
6FXC|1|AA|G|2189
6FXC|1|AA|C|2190
6FXC|1|AA|U|2191
6FXC|1|AA|G|2192
6FXC|1|AA|G|2193
6FXC|1|AA|U|2194
6FXC|1|AA|G|2195
6FXC|1|AA|G|2196
6FXC|1|AA|G|2197
6FXC|1|AA|A|2198
6FXC|1|AA|U|2199
6FXC|1|AA|A|2200
6FXC|1|AA|C|2201
6FXC|1|AA|U|2202
6FXC|1|AA|A|2203
6FXC|1|AA|C|2204
6FXC|1|AA|C|2205
6FXC|1|AA|C|2206
6FXC|1|AA|U|2207
6FXC|1|AA|A|2208
6FXC|1|AA|G|2209
6FXC|1|AA|C|2210

Current chains

Chain AA

23S ribosomal RNA

Nearby chains