IL_6FXC_345

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

6FXC|1|Aa|G|259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_345 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.3477

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6FXC|1|Aa|U|257
6FXC|1|Aa|A|258
6FXC|1|Aa|G|259
6FXC|1|Aa|U|260
*
6FXC|1|Aa|A|282
6FXC|1|Aa|G|283

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Aq

30S ribosomal protein S17