IL_6FXC_346

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAACAUAUG*CAUCUUGAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_346 not in the Motif Atlas

Homologous match to IL_6CZR_360

Geometric discrepancy: 0.5857

The information below is about IL_6CZR_360

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|Aa|G|458
6FXC|1|Aa|A|459
6FXC|1|Aa|A|460
6FXC|1|Aa|C|461
6FXC|1|Aa|A|462
6FXC|1|Aa|U|463
6FXC|1|Aa|A|464
6FXC|1|Aa|U|465
6FXC|1|Aa|G|466
*
6FXC|1|Aa|C|483
6FXC|1|Aa|A|484
6FXC|1|Aa|U|485
6FXC|1|Aa|C|486
6FXC|1|Aa|U|487
6FXC|1|Aa|U|488
6FXC|1|Aa|G|489
6FXC|1|Aa|A|490
6FXC|1|Aa|C|491

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16