IL_6FXC_353

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AUAGGCGAAGCGUGCGAUUGGAUUGCACGU*GGAGAAGACAUUGUGUCUUCGAGUCGUUGAUUU

Length

63 nucleotides

Bulged bases

6FXC|1|BA|A|1489, 6FXC|1|BA|C|1495, 6FXC|1|BA|A|1497, 6FXC|1|BA|U|1503, 6FXC|1|BA|A|1580, 6FXC|1|BA|G|1583, 6FXC|1|BA|U|1584, 6FXC|1|BA|G|1585, 6FXC|1|BA|U|1588, 6FXC|1|BA|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|BA|A|1481
6FXC|1|BA|U|1482
6FXC|1|BA|A|1483
6FXC|1|BA|G|1484
6FXC|1|BA|G|1485
6FXC|1|BA|C|1486
6FXC|1|BA|G|1487
6FXC|1|BA|A|1488
6FXC|1|BA|A|1489
6FXC|1|BA|G|1490
6FXC|1|BA|C|1491
6FXC|1|BA|G|1492
6FXC|1|BA|U|1493
6FXC|1|BA|G|1494
6FXC|1|BA|C|1495
6FXC|1|BA|G|1496
6FXC|1|BA|A|1497
6FXC|1|BA|U|1498
6FXC|1|BA|U|1499
6FXC|1|BA|G|1500
6FXC|1|BA|G|1501
6FXC|1|BA|A|1502
6FXC|1|BA|U|1503
6FXC|1|BA|U|1504
6FXC|1|BA|G|1505
6FXC|1|BA|C|1506
6FXC|1|BA|A|1507
6FXC|1|BA|C|1508
6FXC|1|BA|G|1509
6FXC|1|BA|U|1510
*
6FXC|1|BA|G|1571
6FXC|1|BA|G|1572
6FXC|1|BA|A|1573
6FXC|1|BA|G|1574
6FXC|1|BA|A|1575
6FXC|1|BA|A|1576
6FXC|1|BA|G|1577
6FXC|1|BA|A|1578
6FXC|1|BA|C|1579
6FXC|1|BA|A|1580
6FXC|1|BA|U|1581
6FXC|1|BA|U|1582
6FXC|1|BA|G|1583
6FXC|1|BA|U|1584
6FXC|1|BA|G|1585
6FXC|1|BA|U|1586
6FXC|1|BA|C|1587
6FXC|1|BA|U|1588
6FXC|1|BA|U|1589
6FXC|1|BA|C|1590
6FXC|1|BA|G|1591
6FXC|1|BA|A|1592
6FXC|1|BA|G|1593
6FXC|1|BA|U|1594
6FXC|1|BA|C|1595
6FXC|1|BA|G|1596
6FXC|1|BA|U|1597
6FXC|1|BA|U|1598
6FXC|1|BA|G|1599
6FXC|1|BA|A|1600
6FXC|1|BA|U|1601
6FXC|1|BA|U|1602
6FXC|1|BA|U|1603

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L17