IL_6FXC_370

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UAAGCUUAGUUGCCAUCAUUAAGUUGGGCACUCUAAGUUGACUGC*GAGGAAGGUG

Length

55 nucleotides

Bulged bases

6FXC|1|Aa|U|1137, 6FXC|1|Aa|C|1140, 6FXC|1|Aa|U|1145, 6FXC|1|Aa|A|1147, 6FXC|1|Aa|U|1193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|Aa|U|1127
6FXC|1|Aa|A|1128
6FXC|1|Aa|A|1129
6FXC|1|Aa|G|1130
6FXC|1|Aa|C|1131
6FXC|1|Aa|U|1132
6FXC|1|Aa|U|1133
6FXC|1|Aa|A|1134
6FXC|1|Aa|G|1135
6FXC|1|Aa|U|1136
6FXC|1|Aa|U|1137
6FXC|1|Aa|G|1138
6FXC|1|Aa|C|1139
6FXC|1|Aa|C|1140
6FXC|1|Aa|A|1141
6FXC|1|Aa|U|1142
6FXC|1|Aa|C|1143
6FXC|1|Aa|A|1144
6FXC|1|Aa|U|1145
6FXC|1|Aa|U|1146
6FXC|1|Aa|A|1147
6FXC|1|Aa|A|1148
6FXC|1|Aa|G|1149
6FXC|1|Aa|U|1150
6FXC|1|Aa|U|1151
6FXC|1|Aa|G|1152
6FXC|1|Aa|G|1153
6FXC|1|Aa|G|1154
6FXC|1|Aa|C|1155
6FXC|1|Aa|A|1156
6FXC|1|Aa|C|1157
6FXC|1|Aa|U|1158
6FXC|1|Aa|C|1159
6FXC|1|Aa|U|1160
6FXC|1|Aa|A|1161
6FXC|1|Aa|A|1162
6FXC|1|Aa|G|1163
6FXC|1|Aa|U|1164
6FXC|1|Aa|U|1165
6FXC|1|Aa|G|1166
6FXC|1|Aa|A|1167
6FXC|1|Aa|C|1168
6FXC|1|Aa|U|1169
6FXC|1|Aa|G|1170
6FXC|1|Aa|C|1171
*
6FXC|1|Aa|G|1185
6FXC|1|Aa|A|1186
6FXC|1|Aa|G|1187
6FXC|1|Aa|G|1188
6FXC|1|Aa|A|1189
6FXC|1|Aa|A|1190
6FXC|1|Aa|G|1191
6FXC|1|Aa|G|1192
6FXC|1|Aa|U|1193
6FXC|1|Aa|G|1194

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ag

30S ribosomal protein S7

Chain Ai

30S ribosomal protein S9

Chain Aj

30S ribosomal protein S10

Chain An

30S ribosomal protein S14 type Z