IL_6FYX_033
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYX_033 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1013
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
6FYX|1|2|A|549
6FYX|1|2|G|550
6FYX|1|2|G|551
6FYX|1|2|G|552
6FYX|1|2|C|553
6FYX|1|2|A|554
6FYX|1|2|A|555
6FYX|1|2|G|556
*
6FYX|1|2|C|586
6FYX|1|2|U|587
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (31-MER)
- Chain C
- KLLA0F09812p
- Chain J
- KLLA0E23673p
- Chain e
- 40S ribosomal protein S30
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