IL_6FYX_055
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYX_055 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.096
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6FYX|1|2|G|1110
6FYX|1|2|G|1111
6FYX|1|2|A|1112
6FYX|1|2|G|1113
6FYX|1|2|U|1114
6FYX|1|2|A|1115
6FYX|1|2|U|1116
6FYX|1|2|G|1117
*
6FYX|1|2|U|1128
6FYX|1|2|G|1129
6FYX|1|2|A|1130
6FYX|1|2|A|1131
6FYX|1|2|A|1132
6FYX|1|2|C|1133
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain X
- KLLA0B11231p
- Chain h
- 60S ribosomal protein L41-A
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