IL_6FYX_102

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UCUGU

Length

7 nucleotides

Bulged bases

6FYX|1|2|C|1429, 6FYX|1|2|U|1430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYX_102 not in the Motif Atlas

Geometric match to IL_4LFB_045

Geometric discrepancy: 0.2904

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6FYX|1|2|G|1276
6FYX|1|2|G|1277
*
6FYX|1|2|U|1428
6FYX|1|2|C|1429
6FYX|1|2|U|1430
6FYX|1|2|G|1431
6FYX|1|2|U|1432

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

KLLA0D08305p

Chain K

KLLA0B08173p

Chain U

KLLA0F25542p

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain i

Eukaryotic translation initiation factor 1A