IL_6FYY_006
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 6FYY|1|2|U|66, 6FYY|1|2|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYY_006 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.1216
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6FYY|1|2|U|64
6FYY|1|2|A|65
6FYY|1|2|U|66
6FYY|1|2|A|67
6FYY|1|2|A|68
6FYY|1|2|G|69
*
6FYY|1|2|U|82
6FYY|1|2|G|83
6FYY|1|2|A|84
6FYY|1|2|A|85
6FYY|1|2|A|86
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6
- Chain Y
- 40S ribosomal protein S24
Coloring options: