3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
GGAUAUC*GCUAAUAC
Length
15 nucleotides
Bulged bases
6FYY|1|2|U|169
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FYY_012 not in the Motif Atlas
Homologous match to IL_4V88_394
Geometric discrepancy: 0.1145
The information below is about IL_4V88_394
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.3
Basepair signature
cWW-cWW-tWH-tWH-tHW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

6FYY|1|2|G|142
6FYY|1|2|G|143
6FYY|1|2|A|144
6FYY|1|2|U|145
6FYY|1|2|A|146
6FYY|1|2|U|147
6FYY|1|2|C|148
*
6FYY|1|2|G|164
6FYY|1|2|C|165
6FYY|1|2|U|166
6FYY|1|2|A|167
6FYY|1|2|A|168
6FYY|1|2|U|169
6FYY|1|2|A|170
6FYY|1|2|C|171

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain G
40S ribosomal protein S6
Chain Y
40S ribosomal protein S24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1437 s