IL_6FYY_012

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GGAUAUC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6FYY|1|2|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYY_012 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1145

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6FYY|1|2|G|142
6FYY|1|2|G|143
6FYY|1|2|A|144
6FYY|1|2|U|145
6FYY|1|2|A|146
6FYY|1|2|U|147
6FYY|1|2|C|148
*
6FYY|1|2|G|164
6FYY|1|2|C|165
6FYY|1|2|U|166
6FYY|1|2|A|167
6FYY|1|2|A|168
6FYY|1|2|U|169
6FYY|1|2|A|170
6FYY|1|2|C|171

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24