IL_6FYY_012
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- GGAUAUC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6FYY|1|2|U|169
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYY_012 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1145
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6FYY|1|2|G|142
6FYY|1|2|G|143
6FYY|1|2|A|144
6FYY|1|2|U|145
6FYY|1|2|A|146
6FYY|1|2|U|147
6FYY|1|2|C|148
*
6FYY|1|2|G|164
6FYY|1|2|C|165
6FYY|1|2|U|166
6FYY|1|2|A|167
6FYY|1|2|A|168
6FYY|1|2|U|169
6FYY|1|2|A|170
6FYY|1|2|C|171
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6
- Chain Y
- 40S ribosomal protein S24
Coloring options: