IL_6FYY_050

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GGAUC*GGCAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYY_050 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3185

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6FYY|1|2|G|1040
6FYY|1|2|G|1041
6FYY|1|2|A|1042
6FYY|1|2|U|1043
6FYY|1|2|C|1044
*
6FYY|1|2|G|1072
6FYY|1|2|G|1073
6FYY|1|2|C|1074
6FYY|1|2|A|1075
6FYY|1|2|C|1076

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein S0

Chain B

40S ribosomal protein S1

Chain N

KLLA0F18040p

Chain R

KLLA0B01474p

Chain a

40S ribosomal protein S26

Chain b

40S ribosomal protein S27