IL_6FYY_052

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYY_052 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0999

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6FYY|1|2|G|1110
6FYY|1|2|G|1111
6FYY|1|2|A|1112
6FYY|1|2|G|1113
6FYY|1|2|U|1114
6FYY|1|2|A|1115
6FYY|1|2|U|1116
6FYY|1|2|G|1117
*
6FYY|1|2|U|1128
6FYY|1|2|G|1129
6FYY|1|2|A|1130
6FYY|1|2|A|1131
6FYY|1|2|A|1132
6FYY|1|2|C|1133

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

KLLA0B11231p

Chain h

60S ribosomal protein L41-A