IL_6FYY_067
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- U(PSU)GG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYY_067 not in the Motif Atlas
- Geometric match to IL_4V88_461
- Geometric discrepancy: 0.347
- The information below is about IL_4V88_461
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6FYY|1|2|U|1288
6FYY|1|2|PSU|1289
6FYY|1|2|G|1290
6FYY|1|2|G|1291
*
6FYY|1|2|C|1322
6FYY|1|2|G|1323
6FYY|1|2|A|1324
6FYY|1|2|A|1325
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S0
- Chain C
- KLLA0F09812p
- Chain D
- KLLA0D08305p
- Chain R
- KLLA0B01474p
Coloring options: