IL_6FYY_070

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

6FYY|1|2|A|1345, 6FYY|1|2|U|1346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYY_070 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.0851

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6FYY|1|2|A|1344
6FYY|1|2|A|1345
6FYY|1|2|U|1346
6FYY|1|2|A|1347
*
6FYY|1|2|U|1375
6FYY|1|2|U|1376
6FYY|1|2|C|1377
6FYY|1|2|U|1378

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

KLLA0D08305p

Chain Q

40S ribosomal protein S16

Chain U

KLLA0F25542p