IL_6FYY_072

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUA*UGGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYY_072 not in the Motif Atlas

Homologous match to IL_4V88_458

Geometric discrepancy: 0.1639

The information below is about IL_4V88_458

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_58032.1

Basepair signature

cWW-tWH-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

6FYY|1|2|C|1387
6FYY|1|2|U|1388
6FYY|1|2|A|1389
*
6FYY|1|2|U|1405
6FYY|1|2|G|1406
6FYY|1|2|G|1407
6FYY|1|2|A|1408
6FYY|1|2|A|1409
6FYY|1|2|G|1410

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

KLLA0D10659p

Chain Q

40S ribosomal protein S16

Chain R

KLLA0B01474p

Chain g

KLLA0E12277p