3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
UUG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FYY_075 not in the Motif Atlas
Geometric match to IL_4WF9_018
Geometric discrepancy: 0.1814
The information below is about IL_4WF9_018
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

6FYY|1|2|U|1494
6FYY|1|2|U|1495
6FYY|1|2|G|1496
*
6FYY|1|2|C|1507
6FYY|1|2|U|1508
6FYY|1|2|G|1509

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain T
KLLA0A07194p

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 5.0501 s