IL_6FYY_078

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

G(5MC)CC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYY_078 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1154

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6FYY|1|2|G|1636
6FYY|1|2|5MC|1637
6FYY|1|2|C|1638
6FYY|1|2|C|1639
*
6FYY|1|2|G|1758
6FYY|1|2|U|1759
6FYY|1|2|A|1760
6FYY|1|2|A|1761
6FYY|1|2|C|1762

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain 3

mRNA (31-MER)

Chain h

60S ribosomal protein L41-A

Chain i

Eukaryotic translation initiation factor 1A

Chain m

Eukaryotic translation initiation factor 5