3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
(PSU)GG*CGA
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FYY_097 not in the Motif Atlas
Homologous match to IL_8C3A_459
Geometric discrepancy: 0.3454
The information below is about IL_8C3A_459
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_63702.3
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
13

Unit IDs

6FYY|1|2|PSU|1289
6FYY|1|2|G|1290
6FYY|1|2|G|1291
*
6FYY|1|2|C|1322
6FYY|1|2|G|1323
6FYY|1|2|A|1324

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain A
40S ribosomal protein S0
Chain C
KLLA0F09812p
Chain D
KLLA0D08305p
Chain R
KLLA0B01474p

Coloring options:


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