IL_6G18_058

3D structure

PDB id

6G18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G18_058 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6G18|1|2|G|1168
6G18|1|2|G|1169
6G18|1|2|A|1170
6G18|1|2|G|1171
6G18|1|2|U|1172
6G18|1|2|A|1173
6G18|1|2|U|1174
6G18|1|2|G|1175
*
6G18|1|2|U|1186
6G18|1|2|G|1187
6G18|1|2|A|1188
6G18|1|2|A|1189
6G18|1|2|A|1190
6G18|1|2|C|1191

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain t

Protein LTV1 homolog

Chain v

Serine/threonine-protein kinase RIO2