IL_6G18_099

3D structure

PDB id

6G18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CCUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G18_099 not in the Motif Atlas

Homologous match to IL_8CRE_417

Geometric discrepancy: 0.4561

The information below is about IL_8CRE_417

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6G18|1|2|C|532
6G18|1|2|A|533
6G18|1|2|G|534
*
6G18|1|2|C|549
6G18|1|2|C|550
6G18|1|2|U|551
6G18|1|2|G|552

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30

Chain w

Bystin