IL_6G5H_041
3D structure
- PDB id
- 6G5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6G5H_041 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.359
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
6G5H|1|2|U|801
6G5H|1|2|A|802
6G5H|1|2|C|803
*
6G5H|1|2|G|860
6G5H|1|2|A|861
6G5H|1|2|A|862
6G5H|1|2|U|863
6G5H|1|2|A|864
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S7
- Chain L
- 40S ribosomal protein S11
- Chain W
- 40S ribosomal protein S15a
- Chain X
- 40S ribosomal protein S23
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