IL_6G5H_044

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5H_044 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.1436

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6G5H|1|2|G|874
6G5H|1|2|A|875
6G5H|1|2|C|876
*
6G5H|1|2|G|910
6G5H|1|2|C|911
6G5H|1|2|C|912

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S7

Chain L

40S ribosomal protein S11