IL_6G5H_051

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6G5H|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5H_051 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.2079

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6G5H|1|2|G|952
6G5H|1|2|C|953
6G5H|1|2|U|954
6G5H|1|2|A|955
6G5H|1|2|G|956
*
6G5H|1|2|C|967
6G5H|1|2|U|968
6G5H|1|2|U|969
6G5H|1|2|G|970
6G5H|1|2|G|971
6G5H|1|2|A|972
6G5H|1|2|C|973
6G5H|1|2|C|974

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14