IL_6G5H_080

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6G5H|1|2|C|1701, 6G5H|1|2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5H_080 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.136

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6G5H|1|2|C|1700
6G5H|1|2|C|1701
6G5H|1|2|G|1702
*
6G5H|1|2|C|1833
6G5H|1|2|A|1834
6G5H|1|2|A|1835
6G5H|1|2|G|1836

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain a

40S ribosomal protein S26