IL_6G5H_093

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAUGGU*AACGUC

Length

14 nucleotides

Bulged bases

6G5H|1|2|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5H_093 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.394

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6G5H|1|2|G|108
6G5H|1|2|U|109
6G5H|1|2|U|110
6G5H|1|2|A|111
6G5H|1|2|U|112
6G5H|1|2|G|113
6G5H|1|2|G|114
6G5H|1|2|U|115
*
6G5H|1|2|A|348
6G5H|1|2|A|349
6G5H|1|2|C|350
6G5H|1|2|G|351
6G5H|1|2|U|352
6G5H|1|2|C|353

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11