IL_6G5H_095

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5H_095 not in the Motif Atlas

Geometric match to IL_5J7L_361

Geometric discrepancy: 0.3106

The information below is about IL_5J7L_361

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6G5H|1|2|C|927
6G5H|1|2|G|928
6G5H|1|2|G|929
6G5H|1|2|C|930
6G5H|1|2|C|931
*
6G5H|1|2|G|1010
6G5H|1|2|A|1011
6G5H|1|2|A|1012
6G5H|1|2|U|1013
6G5H|1|2|G|1014

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27