IL_6G5I_015

3D structure

PDB id

6G5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State R

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5I_015 not in the Motif Atlas

Homologous match to IL_4V88_395

Geometric discrepancy: 0.2428

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6G5I|1|2|U|152
6G5I|1|2|G|153
6G5I|1|2|U|154
*
6G5I|1|2|A|164
6G5I|1|2|G|165
6G5I|1|2|A|166

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24