IL_6G5I_058

3D structure

PDB id

6G5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State R

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5I_058 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1249

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6G5I|1|2|G|1168
6G5I|1|2|G|1169
6G5I|1|2|A|1170
6G5I|1|2|G|1171
6G5I|1|2|U|1172
6G5I|1|2|A|1173
6G5I|1|2|U|1174
6G5I|1|2|G|1175
*
6G5I|1|2|U|1186
6G5I|1|2|G|1187
6G5I|1|2|A|1188
6G5I|1|2|A|1189
6G5I|1|2|A|1190
6G5I|1|2|C|1191

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain z

Serine/threonine-protein kinase RIO1