IL_6G5I_059

3D structure

PDB id

6G5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State R

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

6G5I|1|2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5I_059 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.289

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6G5I|1|2|U|1202
6G5I|1|2|G|1203
6G5I|1|2|A|1204
*
6G5I|1|2|U|1694
6G5I|1|2|A|1695
6G5I|1|2|C|1696
6G5I|1|2|A|1697

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain x

RNA-binding protein PNO1