IL_6G5I_067
3D structure
- PDB id
- 6G5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State R
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACA*UUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6G5I_067 not in the Motif Atlas
- Homologous match to IL_4V88_448
- Geometric discrepancy: 0.5023
- The information below is about IL_4V88_448
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30342.2
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
6G5I|1|2|A|1291
6G5I|1|2|C|1292
6G5I|1|2|A|1293
*
6G5I|1|2|U|1306
6G5I|1|2|U|1307
6G5I|1|2|U|1308
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain M
- 40S ribosomal protein S12
- Chain P
- 40S ribosomal protein S15
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ribosomal protein S27a
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