Motif IL_30342.2 Version IL_30342.2 of this group appears in releases 3.90 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_052 | 7A0S | 0.5496 | 1 | X | LSU rRNA | U | 1447 | A | 1448 | C | 1449 | * | G | 1573 | A | 1574 | G | 1576 | cWW | ncwW | cWW | |
| 2 | IL_8F4O_005 | 8F4O | 0.4680 | 1 | B | TPP riboswitch (THI element) | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW | |
| 3 | IL_7TZS_001 | 7TZS | 0.4431 | 1 | X | TPP riboswitch (THI element) | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW | |
| 4 | IL_6RTI_005 | 6RTI | 0.0000 | 0 | X | Aptamer A9g, RNA (43-MER) | A | 4 | CFZ | 5 | CFZ | 6 | * | G | 38 | UFT | 39 | UFT | 40 | cWW | cWW | cWW | |
| 5 | IL_4V88_448 | 4V88 | 0.3225 | 0 | A6 | SSU rRNA | U | 1249 | U | 1250 | U | 1251 | * | A | 1234 | C | 1235 | A | 1236 | cWW | cWW | ||
| 6 | IL_8C3A_454 | 8C3A | 0.6052 | 0 | Other IL | CM | SSU rRNA | U | 1234 | U | 1235 | U | 1236 | * | A | 1219 | C | 1220 | A | 1221 | cWW | cWW | |
| 7 | IL_3LOA_003 | 3LOA | 0.7770 | 1 | Decoding loop with one bulged A | A+B | RNA (21-mer) + RNA (23-mer) | C | 1407 | A | 1408 | C | 1409 | * | G | 1491 | A | 1493 | G | 1494 | cWW | cWW | |
| 8 | IL_2ET8_003 | 2ET8 | 0.7392 | 1 | Decoding loop related | A+B | RNA (22-mer) | G | 15 | A | 17 | G | 18 | * | C | 29 | A | 30 | C | 31 | cWW | cWW | |
| 9 | IL_7A0S_092 | 7A0S | 0.6965 | 1 | Other IL | X | LSU rRNA | C | 2570 | G | 2571 | U | 2572 | * | A | 2579 | C | 2580 | G | 2582 | cWW | cWW | |
| 10 | IL_4V88_476 | 4V88 | 0.7533 | 0 | Other IL | A6 | SSU rRNA | C | 1711 | A | 1712 | G | 1713 | * | U | 1688 | A | 1689 | G | 1690 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGU*AUAC | 2 |
| UUU*ACA | 2 |
| UAC*GACG | 1 |
| A(CFZ)(CFZ)*G(UFT)(UFT) | 1 |
| CAC*GAAG | 1 |
| GAAG*CAC | 1 |
| CGU*ACAG | 1 |
| CAG*UAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*UA | 2 |
| U*C | 2 |
| A*AC | 1 |
| (CFZ)*(UFT) | 1 |
| A*AA | 1 |
| AA*A | 1 |
| G*CA | 1 |
| A*A | 1 |
Release history
| Release | 3.90 |
|---|---|
| Date | 2024-11-06 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Other IL (3)
- Decoding loop related (1)
- Decoding loop with one bulged A (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.25 | Avg 0.59 | Max 0.96
Coloring options: