IL_6G5I_097

3D structure

PDB id

6G5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State R

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCU*ACGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5I_097 not in the Motif Atlas

Homologous match to IL_8C3A_479

Geometric discrepancy: 0.4624

The information below is about IL_8C3A_479

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

6G5I|1|2|C|1738
6G5I|1|2|C|1739
6G5I|1|2|C|1740
6G5I|1|2|U|1741
*
6G5I|1|2|A|1793
6G5I|1|2|C|1794
6G5I|1|2|G|1795
6G5I|1|2|G|1796

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8