IL_6G7Z_003
3D structure
- PDB id
- 6G7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Lariat-capping ribozyme with a shortened DP2 stem loop
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- GCACGGCCCUG*UGUGUUCAAUGAAC
- Length
- 25 nucleotides
- Bulged bases
- 6G7Z|1|B|A|170, 6G7Z|1|B|A|171
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6G7Z_003 not in the Motif Atlas
- Geometric match to IL_6GYV_004
- Geometric discrepancy: 0.3006
- The information below is about IL_6GYV_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32202.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cSH-L-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6G7Z|1|B|G|139
6G7Z|1|B|C|140
6G7Z|1|B|A|141
6G7Z|1|B|C|142
6G7Z|1|B|G|143
6G7Z|1|B|G|144
6G7Z|1|B|C|145
6G7Z|1|B|C|146
6G7Z|1|B|C|147
6G7Z|1|B|U|148
6G7Z|1|B|G|149
*
6G7Z|1|B|U|159
6G7Z|1|B|G|160
6G7Z|1|B|U|161
6G7Z|1|B|G|162
6G7Z|1|B|U|163
6G7Z|1|B|U|164
6G7Z|1|B|C|165
6G7Z|1|B|A|166
6G7Z|1|B|A|167
6G7Z|1|B|U|168
6G7Z|1|B|G|169
6G7Z|1|B|A|170
6G7Z|1|B|A|171
6G7Z|1|B|C|172
Current chains
- Chain B
- Lariat-capping ribozyme
Nearby chains
- Chain A
- Lariat-capping ribozyme
Coloring options: