IL_6GAW_007
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUCAA*UCAUAACG
- Length
- 14 nucleotides
- Bulged bases
- 6GAW|1|AA|U|112, 6GAW|1|AA|U|138
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAW_007 not in the Motif Atlas
- Geometric match to IL_4LFB_011
- Geometric discrepancy: 0.1075
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.5
- Basepair signature
- cWW-cSS-tSS-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6GAW|1|AA|U|110
6GAW|1|AA|A|111
6GAW|1|AA|U|112
6GAW|1|AA|C|113
6GAW|1|AA|A|114
6GAW|1|AA|A|115
*
6GAW|1|AA|U|135
6GAW|1|AA|C|136
6GAW|1|AA|A|137
6GAW|1|AA|U|138
6GAW|1|AA|A|139
6GAW|1|AA|A|140
6GAW|1|AA|C|141
6GAW|1|AA|G|142
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AL
- Mitochondrial ribosomal protein S12
- Chain AO
- Uncharacterized protein
- Chain AQ
- uS17m
- Chain Aj
- 28S ribosomal protein S34, mitochondrial
- Chain An
- Aurora kinase A interacting protein 1
Coloring options: