IL_6GAW_021

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_021 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.1903

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6GAW|1|AA|G|414
6GAW|1|AA|A|415
6GAW|1|AA|C|416
6GAW|1|AA|C|417
6GAW|1|AA|C|418
*
6GAW|1|AA|G|444
6GAW|1|AA|C|445

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AK

28S ribosomal protein S11, mitochondrial

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BD

39S ribosomal protein L2, mitochondrial