IL_6GAW_023

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUACUACUCG*CCUAAAAC

Length

18 nucleotides

Bulged bases

6GAW|1|AA|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_023 not in the Motif Atlas

Geometric match to IL_6UFM_002

Geometric discrepancy: 0.3876

The information below is about IL_6UFM_002

Detailed Annotation

10x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_22278.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6GAW|1|AA|G|491
6GAW|1|AA|U|492
6GAW|1|AA|A|493
6GAW|1|AA|C|494
6GAW|1|AA|U|495
6GAW|1|AA|A|496
6GAW|1|AA|C|497
6GAW|1|AA|U|498
6GAW|1|AA|C|499
6GAW|1|AA|G|500
*
6GAW|1|AA|C|507
6GAW|1|AA|C|508
6GAW|1|AA|U|509
6GAW|1|AA|A|510
6GAW|1|AA|A|511
6GAW|1|AA|A|512
6GAW|1|AA|A|513
6GAW|1|AA|C|514

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain AO

Uncharacterized protein

Chain An

Aurora kinase A interacting protein 1