IL_6GAW_041

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_041 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.2261

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

6GAW|1|AA|C|860
6GAW|1|AA|A|861
6GAW|1|AA|A|862
6GAW|1|AA|G|863
*
6GAW|1|AA|C|907
6GAW|1|AA|A|908
6GAW|1|AA|A|909
6GAW|1|AA|G|910

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain An

Aurora kinase A interacting protein 1

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

Translation initiation factor IF-2, mitochondrial